Under review

How can I use DeepBlue to query ENCODE RNAseq at a gene-level?

floris barthel 5 years ago updated by deepblue 5 years ago 3

I'm interested to get gene-level expression counts/TPMs for ENCODE datasets? Can this be done using DeepBlue? For example, there are matrices found here: https://www.encodeproject.org/files/ENCFF833DWB/.

Can these be searched using DeepBlue?

Hello Floris,

Currently DeepBlue does not import matrices from ENCODE, only wiggle and bed files.

We want to import the ENCODE gene quantification data (we already have from BLUEPRINT), but we can't give a precise time of when we will do it.

Got it, thanks. I suspect that this should be a highly requested feature =)