Your comments
Thanks! This works well. Any suggestions on processing the resulting info?
The function given in the tutorial does not work for me:
# Obtain the information about the experiment_id
info = deepblue_info(experiment_id)
# Print the experiment name, project, biosource, and epigenetic mark.
with(info, { data.frame(name = name, project = project,
biosource = sample_info$biosource_name, epigenetic_mark = epigenetic_mark)
})
This returns an error.
I've also tried to use many different tidyverse options try to convert it to a managable nested data frame (eg. combinations of flatten and unnest) structure but I'm not having any luck.
Got it, thanks. I suspect that this should be a highly requested feature =)
Hey Felipe,
Thanks for your response. I'm currently trying the following:
> experiments = deepblue_list_experiments() Called method: deepblue_list_experiments Reported status was: okay > experiment_meta = deepblue_info(id = experiments$id)
The deepblue_info() command either hangs or is taking a long time (been waiting 30 minutes or so).
Thanks,
Floris
Customer support service by UserEcho
Solved, using purrr does the trick for me
http://r4ds.had.co.nz/lists.html#hierarchy
https://jennybc.github.io/purrr-tutorial/ls01_map-name-position-shortcuts.html.
If this is helpful to anyone, I used the following code: