Lock selection in Experiments grid
Assuming I want to select different assays for the same set of cell types, or the same assays for the same cell types for different projects. I could create a huge request resulting in one file that I have to split later locally; a more convenient way could be to lock certain selections in the experiment grid and create separate requests.
Example:
Select cellA through cellZ (lock)
Select various TFs -> create request
Clear selected TFs
Select various histone modifications -> create request
Clear selected HMs
Example 2:
Select cellA through cellZ (lock)
Select various histone modifications (lock)
Select project A -> create request
Clear project A
Select project B -> create request
Missing Signal Values
I am having some trouble downloading data in the R API/package. It all seems to work fine but I am not getting any signal values. If I download this same data as a bed file there are signals in this range of positon values, but if I download it in R I don't get any values in the signal value column.
R code:
`
id <- deepblue_select_experiments(experiment_name = "E050_WGBS_ReadCoverage.bedgraph", chromosome = "chr6", start=26330464, end=26330664)
request <- deepblue_get_regions(query_id = id, output_format = "CHROMOSOME,START,END,SIGNAL_VALUE")
region <- deepblue_download_request_data(request_id = request)
region
`
Result:
`
Called method: deepblue_select_experiments
<span class="ace_constant ace_language">Reported status was: okay Called method: deepblue_get_regions Reported status was: okay Called method: deepblue_info Reported status was: okay Called method: deepblue_info Reported status was: okay trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r791736&key=anonymous_key' Content type 'application/x-bzip2' length 124 bytes ================================================== downloaded 124 bytes Decompressing downloaded file to /tmp/RtmpZfobRp/file495c5e0585df_uncompress Reading file from /tmp/RtmpZfobRp/file495c5e0585df_uncompress </span>GRanges object with 18 ranges and 1 metadata column: seqnames ranges strand | SIGNAL_VALUE <Rle> <IRanges> <Rle> | <character> [1] chr6 [26330521, 26330522] * | [2] chr6 [26330522, 26330523] * | [3] chr6 [26330544, 26330545] * | [4] chr6 [26330545, 26330546] * | [5] chr6 [26330552, 26330553] * | ... ... ... ... . ... [14] chr6 [26330602, 26330603] * | [15] chr6 [26330603, 26330604] * | [16] chr6 [26330604, 26330605] * | [17] chr6 [26330644, 26330645] * | [18] chr6 [26330645, 26330646] * | ------- seqinfo: 1 sequence from an unspecified genome; no seqlengths
`
Bedfile downloaded from the web interface open in IGV:
Any Suggestions?
Double clicking isn't remove a selected item
After filtering and clicking on a particular dataset if I want to remove the unwanted data it isn't removing by double clicking even though it is mentioned above as such. Please fix the problem.
Simplify addition of project datasets
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